Changelog

This page will journal things done or pending.

• Files as of 2024-09-06 backed up on the server [2024-09-07].
• Updated Dokuwiki to the latest Feb 2024 release [2024-09-07].
• Install useful plugins.
  • DokuWiki Upgrade Plugin by Andreas Gohr [2024-09-07] - to further update infrastructure from within the wiki environment.
  • caption plugin by Till Biskup [2024-09-07] - to improve image embedding.
  • Move Plugin by Michael Hamann [2024-09-07] - most likely will be useful to alter the file structure.
  • Imgpaste plugin by Andreas Gohr [2024-09-11] - to more easily upload images.
  • Wrap plugin by Anika Henke [2024-10-16] - to allow columns, and probably other formatting.
  • Numbered Headings plugin by Satoshi Sahara [2024-11-05] - for numbered headings.
  • Include plugin by Michael Hamann [2024-11-07] - to allow referencing between pages without retyping. Has to be in the same namespace.
  • RefNotes Plugin by Mykola Ostrovskyy [2024-11-07] - for references.
  • EditTable plugin by Andreas Gohr [2024-11-24] - editable GUI for table editing, compatible with base syntax. Doesn't mess up table formatting when using CKGedit.
• Hierarchical breadcrumbs turned on [2024-09-07] - to allow for hierarchical navigating; might need to revisit this because of the flat file structure and many-to-many relationships.

• Need default page templates for
  • Xenobiotics
  • Class of xenobiotics
  • Concepts
  • Antidotes/treatment options
• References probably should not be all-encompassing. I feel that useful review papers, or studies, or case reports should deserve the mention in the footer. If we want to reference small claims, either linking or including the PMID would probably suffice. However, Farkas seems to link and reference all the PMIDs…
• On phone with this template, two-level bullets probably should be the maximum. And if so, second bullet should contain minimal words.
• Need to create sidebar - done.
• Templates
  • Currently settling on Bootstrap3 template because is fresh and has reasonable features [2024-11-26].
  • Ad Hominem Template by Sascha Leib [2024-11-25] but probably need to modify a bit esp font.
  • Mikio theme by James Collins [2024-11-25] and associated mikioplugin - Will investigate to generate horizontal lines under headers.

• To reorder 'wikitox' namespace.
• Sandbox for restructuring is here.
• Created a draft of ToC, organized by systems: Contents by system - [2024-10-26]
• Overlaps between systems (these might require INCLUDE):
  • Antihypertensives - cardio and renal
  • Maybe vit D - endocrine and renal
• Naming should be “X_toxicity” or “X_antidote” because some drugs are used as antidotes/treatments for other toxins.
  • Might need to change 'antidote' to something else. Not all treatments are antidotes.
• Probably two ways to identify drug class - by systems and also by alphabetical or class.
  • Because “beta blocker” under HF meds sounds like a treatment option, although this is a tox site.

• Probably useful:
  • Do plugin as a 'to do list'(https://www.dokuwiki.org/plugin:do).
  • Publish plugin as a hierarchical approval publishing system (https://www.dokuwiki.org/plugin:publish).
  • Blog plugin as a 'most recently updated pages' display (https://www.dokuwiki.org/plugin:blog).
  • Table plugin to edit tables in WYSIWIG (https://www.dokuwiki.org/plugin:edittable).
    • Also datatables for filtering if tabulated data is appropriate? (https://www.dokuwiki.org/plugin:datatables)
  • Indexmenu as hierarchical display (https://www.dokuwiki.org/plugin:indexmenu).
    • But maybe an 'overview' file would be sufficient.
  • Prosemirror plugin (currently beta) seems a good WYSIWYG editor (https://www.dokuwiki.org/plugin:prosemirror).
  • Gallery plugin to display image repository (e.g. mushrooms, animals?) (https://www.dokuwiki.org/plugin:gallery).
  • iFrame plugin to embed existing powerpoint presentations and other media (https://www.dokuwiki.org/plugin:iframe).
• Doubtful:
  • Watchcycle to remind of reviews at intervals (https://www.dokuwiki.org/plugin:watchcycle).
  • Structgantt to display gantt charts (https://www.dokuwiki.org/plugin:structgantt).
    • Looks cool, not sure use case unless many projects and timelines.
  • Diagrams plugin to use a draw.io interface for diagrams (https://www.dokuwiki.org/plugin:diagrams).
    • Need to talk to team whether this will be used at all.
  • Include plugin to display only certain sections of another page (https://www.dokuwiki.org/plugin:include).
    • Potentially useful especially if large central database of info to refer to. However probably not a strong use case here.
  • Discussion plugin as a comment section (https://www.dokuwiki.org/plugin:discussion).
    • But might require moderation.
• Timestamp is in GMT-4.

• Beta blocker - copied from old ver. [2024-11-05]