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2024_revamp_logs [2024/11/06 15:37] – jkohts2024_revamp_logs [2025/04/17 18:27] (current) – [1. Updating infrastructure] jkohts
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       * Imgpaste plugin by Andreas Gohr **[2024-09-11]**  - to more easily upload images.       * Imgpaste plugin by Andreas Gohr **[2024-09-11]**  - to more easily upload images.
       * Wrap plugin by Anika Henke **[2024-10-16]**  - to allow columns, and probably other formatting.       * Wrap plugin by Anika Henke **[2024-10-16]**  - to allow columns, and probably other formatting.
-      * Numbered Headings plugin by Satoshi Sahara **[2024-11-05]** - for numbered headings. +      * Numbered Headings plugin by Satoshi Sahara **[2024-11-05]**  - for numbered headings. 
-      * Include plugin by Michael Hamann **[2024-11-07]** - to allow referencing between pages without retyping. Has to be in the same namespace. +      * Include plugin by Michael Hamann **[2024-11-07]**  - to allow referencing between pages without retyping. Has to be in the same namespace. 
-      * RefNotes Plugin by Mykola Ostrovskyy **[2024-11-07]** - for references.+      * RefNotes Plugin by Mykola Ostrovskyy **[2024-11-07]**  - for references. 
 +      * EditTable plugin by Andreas Gohr **[2024-11-24]**  - editable GUI for table editing, compatible with base syntax. Doesn't mess up table formatting when using CKGedit. 
 +      * Mermaid Plugin by Robert Weinmeister **[2025-01-08]** - mindmap editor just for sitemap structure.
   * Hierarchical breadcrumbs turned on **[2024-09-07]**  - to allow for hierarchical navigating; might need to revisit this because of the flat file structure and many-to-many relationships.   * Hierarchical breadcrumbs turned on **[2024-09-07]**  - to allow for hierarchical navigating; might need to revisit this because of the flat file structure and many-to-many relationships.
 +  * 'maxseclevel' (maximum section edit level) changed to '3' on **[2025-02-19]** - this should help editing smaller chunks. Edit button only viewable to admins. 
 +  * KaTeX Plugin by H.-H. PENG (Hsins) **[2025-04-18]** - for formulae.
 ===== 2. Themes/appearance ===== ===== 2. Themes/appearance =====
 +
   * Need default page templates for   * Need default page templates for
-    * Xenobiotics +      * Xenobiotics 
-    * Class of xenobiotics +      * Class of xenobiotics 
-    * Concepts +      * Concepts 
-    * Antidotes/treatment options +      * Antidotes/treatment options 
-  * References probably should not be all-encompassing. I feel that useful review papers, or studies, or case reports should deserve the mention in the footer. If we want to reference small claims, either linking or including the PMID would probably suffice. However, Farkas seems to link and reference all the PMIDs...+  * References probably should not be all-encompassing. I feel that useful review papers, or studies, or case reports should deserve the mention in the footer. If we want to reference small claims, either linking or including the PMID would probably suffice. However, Farkas seems to link and reference all the PMIDs…
   * On phone with this template, two-level bullets probably should be the maximum. And if so, second bullet should contain minimal words.   * On phone with this template, two-level bullets probably should be the maximum. And if so, second bullet should contain minimal words.
 +  * Need to create [[https://www.dokuwiki.org/faq:sidebar|sidebar]] - done.
 +  * Templates
 +      * Mikio theme by James Collins **[2024-11-25]**  and associated mikioplugin - userall.css for horizontal lines.
 +      * Width of the body content changed from 100% to 86rem fixed width. This will containerize the content close enough to Practical Typography recommendations, assuming ToC remains open. Reads ok even when ToC closed. 
 +      * Works acceptable on mobile. There is a slight side scroll need when a table is rendered, but does not cover anything crucial, nor is it particularly troublesome.
 +      * Alternative fix is to change any tables into images.
  
 ===== 3. Dokuwiki database structure ===== ===== 3. Dokuwiki database structure =====
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   * Created a draft of ToC, organized by systems: [[:contentspagedraft|Contents by system]] - **[2024-10-26]**   * Created a draft of ToC, organized by systems: [[:contentspagedraft|Contents by system]] - **[2024-10-26]**
   * Overlaps between systems (these might require INCLUDE):   * Overlaps between systems (these might require INCLUDE):
-    * Antihypertensives - cardio and renal +      * Antihypertensives - cardio and renal 
-    * Maybe vit D - endocrine and renal+      * Maybe vit D - endocrine and renal 
 +  * Naming should be "X_toxicity" or "X_antidote" because some drugs are used as antidotes/treatments for other toxins. 
 +      * Might need to change 'antidote' to something else. Not all treatments are antidotes. 
 +  * Probably two ways to identify drug class - by systems and also by alphabetical or class. 
 +      * Because "beta blocker" under HF meds sounds like a treatment option, although this is a tox site.
  
 ===== 4. Other ===== ===== 4. Other =====
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 ==== Page changelog ==== ==== Page changelog ====
-  * [[beta_blocker|Beta blocker]] - copied from old ver. [2024-11-05]+ 
 +  * Started with [[:beta_blocker_toxicity|Beta blocker]] - copied from old ver. [2024-11-05] 
 +    * Note: CKGedit potentially messes up heading numbers 
 +  * Many concept pages - priority retrieve the latest version, most likely from the 'wikitox:' namespace